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1.
Protein Expr Purif ; 183: 105877, 2021 07.
Artigo em Inglês | MEDLINE | ID: mdl-33775769

RESUMO

The Leishmania major leucyl-aminopeptidase (LAPLm), a member of the M17 family of proteases, is a potential drug target for treatment of leishmaniasis. To better characterize enzyme properties, recombinant LAPLm (rLAPLm) was expressed in Escherichia coli. A LAPLm gene was designed, codon-optimized for expression in E. coli, synthesized and cloned into the pET-15b vector. Production of rLAPLm in E. coli Lemo21(DE3), induced for 4 h at 37 °C with 400 µM IPTG and 250 µM l-rhamnose, yielded insoluble enzyme with a low proportion of soluble and active protein, only detected by an anti-His antibody-based western-blot. rLAPLm was purified in a single step by immobilized metal ion affinity chromatography. rLAPLm was obtained with a purity of ~10% and a volumetric yield of 2.5 mg per liter, sufficient for further characterization. The aminopeptidase exhibits optimal activity at pH 7.0 and a substrate preference for Leu-p-nitroanilide (appKM = 30 µM, appkcat = 14.7 s-1). Optimal temperature is 50 °C, and the enzyme is insensitive to 4 mM Co2+, Mg2+, Ca2+ and Ba2+. However, rLAPLm was activated by Zn2+, Mn2+ and Cd2+ but is insensitive towards the protease inhibitors PMSF, TLCK, E-64 and pepstatin A, being inhibited by EDTA and bestatin. Bestatin is a potent, non-competitive inhibitor of the enzyme with a Ki value of 994 nM. We suggest that rLAPLm is a suitable target for inhibitor identification.


Assuntos
Aminopeptidases , Escherichia coli , Leishmania major , Proteínas de Protozoários , Aminopeptidases/biossíntese , Aminopeptidases/química , Aminopeptidases/genética , Aminopeptidases/isolamento & purificação , Escherichia coli/genética , Escherichia coli/metabolismo , Cinética , Leishmania major/enzimologia , Leishmania major/genética , Proteínas de Protozoários/biossíntese , Proteínas de Protozoários/química , Proteínas de Protozoários/genética , Proteínas de Protozoários/isolamento & purificação , Proteínas Recombinantes/biossíntese , Proteínas Recombinantes/química , Proteínas Recombinantes/genética , Proteínas Recombinantes/isolamento & purificação
2.
Z Naturforsch C J Biosci ; 75(11-12): 397-407, 2020 Nov 26.
Artigo em Inglês | MEDLINE | ID: mdl-32609656

RESUMO

Metallo-aminopeptidases (mAPs) control many physiological processes. They are classified in different families according to structural similarities. Neutral mAPs catalyze the cleavage of neutral amino acids from the N-terminus of proteins or peptide substrates; they need one or two metallic cofactors in their active site. Information about marine invertebrate's neutral mAPs properties is scarce; available data are mainly derived from genomics and cDNA studies. The goal of this work was to characterize the biochemical properties of the neutral APs activities in eight Cuban marine invertebrate species from the Phyla Mollusca, Porifera, Echinodermata, and Cnidaria. Determination of substrate specificity, optimal pH and effects of inhibitors (1,10-phenanthroline, amastatin, and bestatin) and cobalt on activity led to the identification of distinct neutral AP-like activities, whose biochemical behaviors were similar to those of the M1 and M17 families of mAPs. Additionally, M18-like glutamyl AP activities were detected. Thus, marine invertebrates express biochemical activities likely belonging to various families of metallo-aminopeptidases.


Assuntos
Sequência de Aminoácidos/genética , Aminopeptidases/química , Organismos Aquáticos/enzimologia , Invertebrados/enzimologia , Aminopeptidases/antagonistas & inibidores , Aminopeptidases/genética , Aminopeptidases/isolamento & purificação , Animais , Cuba , Leucina/análogos & derivados , Leucina/farmacologia , Peptídeos/farmacologia , Fenantrolinas/farmacologia , Especificidade por Substrato
3.
J Vis Exp ; (159)2020 05 13.
Artigo em Inglês | MEDLINE | ID: mdl-32478746

RESUMO

The M42 aminopeptidases form functionally active complexes made of 12 subunits. Their assembly process appears to be regulated by their metal ion cofactors triggering a dimer-dodecamer transition. Upon metal ion binding, several structural modifications occur in the active site and at the interaction interface, shaping dimers to promote the self-assembly. To observe such modifications, stable oligomers must be isolated prior to structural study. Reported here is a method that allows the purification of stable dodecamers and dimers of TmPep1050, an M42 aminopeptidase of T. maritima, and their structure determination by X-ray crystallography. Dimers were prepared from dodecamers by removing metal ions with a chelating agent. Without their cofactor, dodecamers became less stable and were fully dissociated upon heating. The oligomeric structures were solved by the straightforward molecular replacement approach. To illustrate the methodology, the structure of a TmPep1050 variant, totally impaired in metal ion binding, is presented showing no further breakdown of dimers to monomers.


Assuntos
Aminopeptidases/química , Cristalografia por Raios X , Multimerização Proteica , Thermotoga maritima/enzimologia , Sequência de Aminoácidos , Aminopeptidases/isolamento & purificação , Aminopeptidases/metabolismo , Cromatografia em Gel , Cristalização , Recombinação Homóloga , Modelos Moleculares
4.
Biochem J ; 477(3): 727-745, 2020 02 14.
Artigo em Inglês | MEDLINE | ID: mdl-31957806

RESUMO

Late-infantile neuronal ceroid lipofuscinosis (LINCL) is a neurodegenerative lysosomal storage disorder caused by mutations in the gene encoding the protease tripeptidyl-peptidase 1 (TPP1). Progression of LINCL can be slowed or halted by enzyme replacement therapy, where recombinant human TPP1 is administered to patients. In this study, we utilized protein engineering techniques to increase the stability of recombinant TPP1 with the rationale that this may lengthen its lysosomal half-life, potentially increasing the potency of the therapeutic protein. Utilizing multiple structure-based methods that have been shown to increase the stability of other proteins, we have generated and evaluated over 70 TPP1 variants. The most effective mutation, R465G, increased the melting temperature of TPP1 from 55.6°C to 64.4°C and increased its enzymatic half-life at 60°C from 5.4 min to 21.9 min. However, the intracellular half-life of R465G and all other variants tested in cultured LINCL patient-derived lymphoblasts was similar to that of WT TPP1. These results provide structure/function insights into TPP1 and indicate that improving in vitro thermal stability alone is insufficient to generate TPP1 variants with improved physiological stability. This conclusion is supported by a proteome-wide analysis that indicates that lysosomal proteins have higher melting temperatures but also higher turnover rates than proteins of other organelles. These results have implications for similar efforts where protein engineering approaches, which are frequently evaluated in vitro, may be considered for improving the physiological properties of proteins, particularly those that function in the lysosomal environment.


Assuntos
Aminopeptidases , Dipeptidil Peptidases e Tripeptidil Peptidases , Lipofuscinoses Ceroides Neuronais , Proteínas , Serina Proteases , Aminopeptidases/química , Aminopeptidases/genética , Aminopeptidases/isolamento & purificação , Aminopeptidases/metabolismo , Animais , Células CHO , Clonagem Molecular , Cricetulus , Dipeptidil Peptidases e Tripeptidil Peptidases/química , Dipeptidil Peptidases e Tripeptidil Peptidases/genética , Dipeptidil Peptidases e Tripeptidil Peptidases/isolamento & purificação , Dipeptidil Peptidases e Tripeptidil Peptidases/metabolismo , Endopeptidases/química , Endopeptidases/genética , Endopeptidases/isolamento & purificação , Endopeptidases/metabolismo , Terapia de Reposição de Enzimas , Estabilidade Enzimática , Humanos , Linfócitos , Mutação , Lipofuscinoses Ceroides Neuronais/tratamento farmacológico , Lipofuscinoses Ceroides Neuronais/genética , Lipofuscinoses Ceroides Neuronais/metabolismo , Cultura Primária de Células , Engenharia de Proteínas/métodos , Proteínas/química , Proteínas/genética , Proteínas/isolamento & purificação , Proteínas/metabolismo , Serina Proteases/química , Serina Proteases/genética , Serina Proteases/isolamento & purificação , Serina Proteases/metabolismo , Tripeptidil-Peptidase 1
5.
Int J Biol Macromol ; 109: 651-663, 2018 Apr 01.
Artigo em Inglês | MEDLINE | ID: mdl-29274418

RESUMO

Membrane bound proline iminopeptidase (PIP) from lactic acid bacteria (LAB) L. plantarum was extracted and purified using CM-sephadex, Sephadex G-100 and Q-sepharose column chromatography. PIP was purified with purification fold 7.13 and 33.5% yield. SDS-PAGE and MALDI-TOF revealed it as homodimer with molecular weight of 37.9 kDa and subunit of mass 18.9 kDa. Purified enzyme exhibited maximum activity at 45 °C and pH 7.0. Km and Vmax of purified PIP were 65 µM and 25.9 nm/min/ml respectively. Inhibition by PMSF confirmed it a serine protease. Metal ions and EDTA showed no effect on enzyme activity. The enzyme mainly hydrolysed Pro-4mßNA. The effectiveness of enzyme in purified form, membrane bound form and in combination with other enzymes to degrade collagen resulting in pharmaceutically significant collagen hydrolysates and in meat tenderization marks its industrial importance. There are very few PIPs are characterized from LAB, and therefore this study is industrially significant and brings some new knowledge into this area.


Assuntos
Aminopeptidases/química , Aminopeptidases/metabolismo , Carne/parasitologia , Peso Molecular , Probióticos , Aminopeptidases/isolamento & purificação , Cromatografia Líquida , Colágeno/química , Colágeno/metabolismo , Estabilidade Enzimática , Microbiologia de Alimentos , Hidrólise , Íons , Cinética , Metais/química , Proteólise , Solventes , Espectrometria de Massas por Ionização e Dessorção a Laser Assistida por Matriz , Especificidade por Substrato , Temperatura
6.
J Agric Food Chem ; 65(43): 9412-9418, 2017 Nov 01.
Artigo em Inglês | MEDLINE | ID: mdl-29035041

RESUMO

In this study, a novel ß-cypermethrin-degrading enzyme was isolated and purified by 32.8 fold from the extracellular cell-free filtrate of Pseudomonas aeruginosa GF31with the protein recovery of 26.6%. The molecular mass of the enzyme was determined to be 53 kDa. The optimum temperature for the activity was surprisingly 60 °C, and moreover, the purified enzyme showed a good pH stability, maintaining over 85% of its initial activity in the pH 5.0-9.0 range. Most of the common metal ions exhibited little influence on the activity except for Hg2+, Ag+, and Cu2+. After the complete gene sequence of the degrading enzyme was obtained by subcloning, sequence analyses as well as enzymatic properties demonstrated that the islolated enzyme should be an aminopeptidase. This is the first reported aminopeptidase for pyrethroid hydrolase, providing new potential enzyme resources for the degradation of this type of pesticide.


Assuntos
Aminopeptidases/química , Aminopeptidases/metabolismo , Proteínas de Bactérias/química , Pseudomonas aeruginosa/enzimologia , Piretrinas/química , Aminopeptidases/genética , Aminopeptidases/isolamento & purificação , Proteínas de Bactérias/genética , Proteínas de Bactérias/isolamento & purificação , Proteínas de Bactérias/metabolismo , Biocatálise , Estabilidade Enzimática , Concentração de Íons de Hidrogênio , Peso Molecular , Pseudomonas aeruginosa/química , Pseudomonas aeruginosa/genética , Piretrinas/metabolismo , Especificidade por Substrato , Temperatura
7.
Sheng Wu Gong Cheng Xue Bao ; 33(1): 90-98, 2017 Jan 25.
Artigo em Chinês | MEDLINE | ID: mdl-28959866

RESUMO

Aminopeptidase N (APN) belonging to zinc-dependent metalloproteinase, not only catalyzes protein proteolytic process, but also is involved in the pathogenic process as the receptor of pathogenic toxin. In Bombyx mori, APN gene family consists of 16 members, of which BmAPN4 binds trypsin-activated parasporal crystal (PC) toxin isolated from Bacillus bombysepticus (Bb). In order to verify whether or not other APNs interact with PC toxin during the pathogenesis of Bb, we cloned BmAPN5, a member of aminopeptidase family, from the silkworm midgut. The full length of BmAPN5 is 3313 bp, encoding 953 amino acids, containing a zinc peptidase_M1 and ERAP1_C domains. A recombinant GST-BmAPN5 was purified by a prokaryotic expression system. Far-Western blotting, co-immunoprecipitation and ELISA. Binding saturation assays demonstrated that PC after activated by trypsin could be bound by BmAPN5. Additionally, cytotoxic activity of trypsin-activated PC in Sf9 cells transfected with BmAPN5 showed that cells exhibited dramatic cytological changes, including swelling and lysis, revealing BmAPN5 serves as a functional receptor that participates in Bb and PC pathogenicity. These provide some clues for further exploring the pathogenesis relationships of Bb and host.


Assuntos
Aminopeptidases/isolamento & purificação , Bacillus/química , Endotoxinas/isolamento & purificação , Sequência de Aminoácidos , Animais , Bacillus thuringiensis , Proteínas de Bactérias , Bombyx , Antígenos CD13 , Proteínas Hemolisinas
8.
J Biosci Bioeng ; 124(5): 534-541, 2017 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-28698148

RESUMO

Xaa-Pro aminopeptidases are peptidases responsible for the cleavage of any amino acid N-terminally adjacent to a proline residue. We identified a gene encoding a putative Xaa-Pro aminopeptidase in the genome of the filamentous fungus Aspergillus oryzae (genome database number: AO090701000720) and named this gene xpmA. We produced its enzyme in a C-terminally His6-tag-fused form in an Escherichia coli expression system and purified it. The purified recombinant XpmA (rXpmA) showed hydrolysis activity toward Xaa-Pro-oligopeptides, especially the two dipeptides Ala-Pro and Phe-Pro. The molecular weight of rXpmA was estimated to be 69 kDa by SDS-PAGE and 126 kDa by gel filtration, suggesting that it is a homodimer. The enzyme was activated by various divalent metal ions such as Mn2+, Co2+, and Mg2+; in particular, the enzyme activity was increased 27.6-times relative to the no-addition control by 1 mM Mn2+. Additionally, 10 mM EDTA suppressed its activity to 0.26-times of the control level. Therefore, rXpmA was a metalloprotease. Optimal hydrolytic activity of rXpmA was observed at 50°C and pH 8.5-9.0. The enzyme was stable up to 50°C and from pH 4.0 to 11.0. rXpmA showed substrate inhibition by Leu-Pro, Ser-Pro and Arg-Pro at concentrations over 4 mM, 10 mM, and 3 mM, respectively. NaCl increased the enzyme activity in the concentration range 0.5-3.0 M, suggesting that the enzyme is halophilic.


Assuntos
Aminopeptidases/genética , Aminopeptidases/metabolismo , Aspergillus oryzae/enzimologia , Dipeptídeos/metabolismo , Escherichia coli/genética , Prolina/metabolismo , Sequência de Aminoácidos , Aminopeptidases/biossíntese , Aminopeptidases/isolamento & purificação , Aspergillus oryzae/genética , Dipeptídeos/farmacologia , Eletroforese em Gel de Poliacrilamida , Histidina , Concentração de Íons de Hidrogênio , Hidrólise/efeitos dos fármacos , Peso Molecular , Oligopeptídeos , Prolina/análogos & derivados , Prolina/farmacologia , Especificidade por Substrato/efeitos dos fármacos , Temperatura
9.
Biosci Biotechnol Biochem ; 81(6): 1246-1253, 2017 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-28485212

RESUMO

Eikenella corrodens 1073 was found to show hemolytic activity when grown on sheep blood agar. A high and dose-dependent hemolytic activity was detected in the cell envelope fraction, which was further purified by ion-exchange and gel-filtration chromatography. Consequently, a 65-kDa protein with hemolytic activity was obtained, suggesting that this protein might be a hemolysin. Its N-terminal amino acid sequence was nearly identical to that of X-prolyl aminopeptidase from E. corrodens ATCC 23834. To confirm that X-prolyl aminopeptidase functions as a hemolytic factor, we expressed the hlyA gene, encoding X-prolyl aminopeptidase, in Escherichia coli. After induction with isopropyl ß-D-1-thiogalactopyranoside, a protein of about 65 kDa was purified on a Ni column, and its hemolytic activity was confirmed. Meanwhile, a strain with a disrupted hlyA gene, which was constructed by homologous recombination, did not show any hemolytic activity. These results suggested that X-prolyl aminopeptidase might function as a hemolysin in E. corrodens.


Assuntos
Aminopeptidases/isolamento & purificação , Proteínas de Bactérias/isolamento & purificação , Eikenella corrodens/enzimologia , Eikenella corrodens/patogenicidade , Proteínas Hemolisinas/isolamento & purificação , Hemólise/efeitos dos fármacos , Aminopeptidases/genética , Aminopeptidases/metabolismo , Aminopeptidases/farmacologia , Proteínas de Bactérias/genética , Proteínas de Bactérias/metabolismo , Proteínas de Bactérias/farmacologia , Fracionamento Celular , Clonagem Molecular , Eikenella corrodens/genética , Eikenella corrodens/isolamento & purificação , Eritrócitos/citologia , Eritrócitos/efeitos dos fármacos , Escherichia coli/genética , Escherichia coli/metabolismo , Expressão Gênica , Proteínas Hemolisinas/genética , Proteínas Hemolisinas/metabolismo , Proteínas Hemolisinas/farmacologia , Recombinação Homóloga , Humanos , Peso Molecular , Periodontite/microbiologia , Periodonto/microbiologia , Proteínas Recombinantes/genética , Proteínas Recombinantes/isolamento & purificação , Proteínas Recombinantes/metabolismo , Proteínas Recombinantes/farmacologia
10.
Appl Biochem Biotechnol ; 181(4): 1611-1623, 2017 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-27889870

RESUMO

cDNA coding a prolyl aminopeptidase (PAP) was cloned from Aspergillus oryzae and over expressed in Bacillus subtilis with a 6×His tag in N-terminus. The recombinant prolyl aminopeptidase was secreted to extracellular by adding 2 mM CaCl2 and 5% D-sorbitol in TB medium; the enzyme activity in fermented supernatant increased from 7.2 to 41.5 U mL-1. It has been purified 4.3-fold through Ni-chelating affinity chromatography with a recovery of 47.3%. The purified enzyme is stable below 50 °C and within pH 6-11, and with the highest activity at pH 7.5 and 50 °C. Several kinds of salt can activate enzyme activity in a certain concentration and the relative activity was 127.02% even when the concentration of NaCl reached 4.36 M. It cleaved N-terminal Pro residues from many peptides but shown different hydrolysis rates for various Pro-X dipeptides or peptides which are of different lengths. It combined with alkaline protease and leucine aminopeptidase to hydrolyze casein, many free amino acid especially proline and small peptide of hydrolysate increased significantly.


Assuntos
Aminopeptidases/genética , Aminopeptidases/metabolismo , Aspergillus oryzae/enzimologia , Bacillus subtilis/genética , Engenharia de Proteínas/métodos , Sequência de Aminoácidos , Aminopeptidases/isolamento & purificação , Aspergillus oryzae/genética , Bacillus subtilis/citologia , Caseínas/metabolismo , DNA Recombinante/genética , Espaço Extracelular/efeitos dos fármacos , Espaço Extracelular/genética , Expressão Gênica , Concentração de Íons de Hidrogênio , Hidrólise , Especificidade por Substrato , Temperatura
11.
Food Chem ; 214: 347-353, 2017 Jan 01.
Artigo em Inglês | MEDLINE | ID: mdl-27507484

RESUMO

An aminopeptidase was isolated from the marine Bacillus licheniformis SWJS33 (BLAP) and purified. According to the tandem mass spectrometry, the enzyme displayed 11% amino acid identity with the aminopeptidase from Bacillus (gi|496687392). BLAP exhibited maximum activity at 60°C and pH 8.0-8.5 and had a molecular mass of 100kDa. The presence of NaCl enabled 50% improvement of enzyme activity with 10-15% NaCl being the best. The observed inactivation by EDTA and bestatin and activation by Co(2+) and Ag(+) indicated that the obtained enzyme was a metalloaminopeptidase. Such an aminopeptidase could further improve the hydrolysis degree of soy protein isolate hydrolysates catalyzed by papain, Alcalase 2.4L or Flavourzyme 500MG from 8.5%, 9.5% or 14.4-18.8%, 18.7% or 20.1%, respectively, while decreasing the bitter intensity score of the SPI hydrolysates catalyzed by Alcalase 2.4L from 3.6 to 0.4.


Assuntos
Aminopeptidases/isolamento & purificação , Bacillus licheniformis/metabolismo , Proteínas de Soja/metabolismo , Aminopeptidases/metabolismo , Ácido Edético/farmacologia , Endopeptidases/metabolismo , Hidrólise/efeitos dos fármacos , Leucina/análogos & derivados , Leucina/farmacologia , Papaína/metabolismo , Cloreto de Sódio/farmacologia , Subtilisinas/metabolismo , Espectrometria de Massas em Tandem
12.
Parasitol Int ; 66(1): 816-820, 2017 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-27693560

RESUMO

Schistosoma mansoni enzymes play important roles in host-parasite interactions and are potential targets for immunological and/or pharmacological attack. The aim of this study was to comparatively assess the presence of hydrolytic activities (phosphatases, glycosidases, aminopeptidases) in soluble (SF) and membrane (MF) fractions from different S. mansoni developmental stages (schistosomula 0 and 3h, juveniles, and adult worms of 28 and 45days-old, respectively), by using simple enzyme-substrate microassays. Our results show and confirm the prominent presence of alkaline phosphatase (AlP) activity in the MF of all the above parasite stages, highlighting also the relevant presence of MF-associated α-mannosidase (α-MAN) activity in juveniles. A soluble AlP activity, together with ß-N-D-acetylglucosaminidase (ß-NAG), and α-MAN activities, was detected in SF of schistosomulum 0h. Soluble ß-NAG, α-MAN, acid phosphatase (AcP), leucin (LAP) and alanine (AAP) aminopeptidase activities were also seen in the SF of the other different developmental stages. This work shows different soluble and membrane-associated hydrolytic capacities in each S. mansoni developmental stage from schistosomula to adults that might be exploitable as potential new targets for immune and/or chemoprophylactic strategies.


Assuntos
Fosfatase Alcalina/metabolismo , Glicosídeo Hidrolases/metabolismo , Proteínas de Helminto/metabolismo , Schistosoma mansoni/enzimologia , Schistosoma mansoni/crescimento & desenvolvimento , alfa-Manosidase/isolamento & purificação , alfa-Manosidase/metabolismo , Fosfatase Alcalina/imunologia , Fosfatase Alcalina/isolamento & purificação , Aminopeptidases/química , Aminopeptidases/imunologia , Aminopeptidases/isolamento & purificação , Animais , Membrana Celular/química , Membrana Celular/enzimologia , Glicosídeo Hidrolases/imunologia , Glicosídeo Hidrolases/isolamento & purificação , Proteínas de Helminto/imunologia , Estágios do Ciclo de Vida , Schistosoma mansoni/imunologia , Esquistossomose mansoni/terapia , alfa-Manosidase/imunologia
13.
Plant Physiol Biochem ; 109: 326-336, 2016 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-27783982

RESUMO

Aminopeptidases, together with other proteases, execute and regulate the total and specifically limited protein breakdown involved in plant physiology, raising the possibility of their involvement in response to drought. We have identified, in leaves of Phaseolus vulgaris L., five aminopeptidases (E.C.3.4.11) whose levels of activity changed when three week old plants were subjected to drought. First, second and third trifoliate leaves were investigated separately. The aminopeptidases were first identified then isolated using ion exchange chromatography of leaf extracts. Three, named PvAP1, PvAP2 and PvAP4, are metallo aminopeptidases with broad substrate specificity, active against substrates conjugated to alanine and lysine. Two others, PvAP3 and PvAP5, are apparently serine aminopeptidases, the former active against substrates conjugated to phenylalanine and leucine, and the latter characterised by narrow specificity against substrates conjugated to phenylalanine. Their apparent molecular weights range from ∼37 kDa to ∼80 kDa. Levels of activity of individual aminopeptidases in both watered and drought stressed plants are shown to depend on the age of leaves. In watered plants they were generally highest in young, and very low in older, trifoliate leaves, the latter with the exception of PvAP5. Drought initiated an almost general increase of their activities, although to different extents, with the exception of PvAP4 and PvAP5 in young trifoliate leaves. Thus, in such studies it is necessary to investigate the effects of drought separately in leaves of different ages in order to elucidate the different complex and probably specific roles of aminopeptidases in the response of common bean to drought.


Assuntos
Aminopeptidases/metabolismo , Phaseolus/enzimologia , Phaseolus/crescimento & desenvolvimento , Proteínas de Plantas/metabolismo , Aminopeptidases/isolamento & purificação , Secas , Folhas de Planta/enzimologia , Folhas de Planta/crescimento & desenvolvimento , Proteínas de Plantas/isolamento & purificação
14.
Protein Expr Purif ; 122: 23-30, 2016 06.
Artigo em Inglês | MEDLINE | ID: mdl-26898926

RESUMO

Aminopeptidases are widely used for creating protein hydrolysates and peptide sequencing. The ywaD gene from a new Bacillus isolate, named Bacillus subtilis subsp. subtilis str. BSP1, was cloned into the yeast expression vector pHBM905A and expressed and secreted by Pichia pastoris strain GS115. The deduced amino acid sequence of the aminopeptidase encoded by the ywaD gene shared up to 98% identity with aminopeptidases from B. subtilis strains 168 and zj016. The yield (3.81 g/l) and specific activity (788 U/mg) of recombinant YwaD in high-density fermentation were extremely high. And 829.83 mg of the purified enzyme (4089.72 U/mg) were harvested. YwaD was glycosylated, and its activity decreased after deglycosylation, which was similar to that of the aminopeptidase from B. subtilis strain zj016. YwaD was most active toward l-arginine-4-nitroanilide. Moreover, it exhibited high resistance to carbamide, which was not true for aminopeptidases from B. subtilis strains 168 and zj016, which could simplify the purification of YwaD. Moreover, the expression and parts of characterization of the aminopeptidase from B. subtilis strain 168 in Pichia pastoris were added as supplementary material. The sequence and other characteristics of YwaD were compared with those of aminopeptidases from B. subtilis strains 168 and zj016, and they will provide a solid foundation for further research on the influence of amino acid mutations on the function of aminopeptidases.


Assuntos
Aminopeptidases/genética , Aminopeptidases/metabolismo , Bacillus subtilis/enzimologia , Bacillus subtilis/genética , Clonagem Molecular/métodos , Pichia/genética , Sequência de Aminoácidos , Aminopeptidases/química , Aminopeptidases/isolamento & purificação , Bacillus subtilis/química , Bacillus subtilis/metabolismo , Fermentação , Glicosilação , Concentração de Íons de Hidrogênio , Proteínas Recombinantes/química , Proteínas Recombinantes/genética , Proteínas Recombinantes/isolamento & purificação , Proteínas Recombinantes/metabolismo , Alinhamento de Sequência
15.
Sci Rep ; 5: 17641, 2015 Dec 01.
Artigo em Inglês | MEDLINE | ID: mdl-26621790

RESUMO

The peptidyl nucleoside blasticidin S (BS) isolated from Streptomyces griseochromogenes was the first non-mercurial fungicide used on a large scale to prevent rice blast. In the biosynthesis of BS, leucylblasticidin S (LBS) was suggested as the penultimate metabolite with 20-fold less inhibitory activity than the final product BS. Incomplete conversion of LBS to BS at a variable efficiency ranging from 10% to 90% was observed either in the native strain S. griseochromogenes or a heterologous producer Streptomyces lividans WJ2. In this study, we determined that maturation of BS from LBS is not a spontaneous process but is governed by a standalone peptidase PepN, which hydrolyzes LBS in a pH-sensitive way with most appropriate of pH 7~8 but is inactive when the pH is below 5 or above 10. PepN1 and PepN2, two neighboring PepN homologs from Streptomyces lividans were purified in E. coli but displayed ca.100-fold difference in LBS hydrolytic activity. Overexpression of pepN1 in WJ2 enhanced BS yield by 100% and lowered the ratio of LBS to BS from 2:1 to 2:3. This work presents the expansion of the biological role for PepN in antibiotic maturation and the first report of hydrolysis of beta amide linkage by this conserved enzyme.


Assuntos
Aminopeptidases/química , Proteínas de Bactérias/química , Streptomyces lividans/enzimologia , Aminopeptidases/isolamento & purificação , Aminopeptidases/metabolismo , Proteínas de Bactérias/isolamento & purificação , Proteínas de Bactérias/metabolismo , Catálise , Nucleosídeos/química , Nucleosídeos/metabolismo
16.
FEBS Lett ; 589(24 Pt B): 4039-46, 2015 Dec 21.
Artigo em Inglês | MEDLINE | ID: mdl-26611344

RESUMO

The adaptor protein ClpS associates to the Clp protease and promotes degradation of N-end rule substrates in eubacteria and in algal/plant chloroplasts. Cyanobacteria are unusual in having two distinct ClpS paralogs. Although ClpSl is typical of bacterial ClpS, ClpS2 differs in crucial ways. ClpS2 in Synechococcus elongatus is a relatively low-abundant, soluble protein essential for phototrophic growth. Like ClpSl, ClpS2 binds to the ClpCP3/R protease to block α-casein degradation and promote that of N-end rule substrates in vitro. However, their substrate specificity differs, with ClpSl recognizing destabilizing Phe and Tyr residues at the substrate N-terminus whereas ClpS2 recognizes Leu. Overall, ClpS2 appears to have independently evolved in cyanobacteria to degrade a particular group of proteins, whose turnover is vital for cell viability.


Assuntos
Aminopeptidases/metabolismo , Proteínas de Bactérias/metabolismo , Synechococcus/enzimologia , Sequência de Aminoácidos , Aminopeptidases/química , Aminopeptidases/genética , Aminopeptidases/isolamento & purificação , Proteínas de Bactérias/química , Proteínas de Bactérias/genética , Proteínas de Bactérias/isolamento & purificação , Sequência Conservada , Cinética , Leucina/metabolismo , Viabilidade Microbiana , Dados de Sequência Molecular , Peso Molecular , Proteínas Mutantes/química , Proteínas Mutantes/isolamento & purificação , Proteínas Mutantes/metabolismo , Filogenia , Estabilidade Proteica , Proteólise , Proteínas Recombinantes/química , Proteínas Recombinantes/isolamento & purificação , Proteínas Recombinantes/metabolismo , Solubilidade , Especificidade por Substrato , Synechococcus/crescimento & desenvolvimento
17.
Appl Biochem Biotechnol ; 173(7): 1765-77, 2014 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-24879594

RESUMO

A strain that exhibited intracellular proline-specific aminopeptidase (PAP) activity was isolated from soy sauce koji and identified as Aspergillus oryzae JN-412. The gene coding PAP was cloned and efficiently expressed in Escherichia coli BL21 in a biologically active form. The highest specific activity reached 52.28 U mg(-1) at optimum cultivation conditions. The recombinant enzyme was purified 3.3-fold to homogeneity with a recovery of 36.7% from cell-free extract using Ni-affinity column chromatography. It appeared as a single protein band on SDS-PAGE with molecular mass of approximately 50 kDa. The purified enzyme exhibited the highest activity at 60 °C and pH 7.5. The enzyme activity was inhibited by PMSF and ions like Zn2+ and Cu2+. DTT, ß-mercaptoethanol, EDTA, and ions like Co2+, Mg2+, Mn2+, and Ca2+ had no influence on enzyme activity, whereas Ni2+ enhanced the enzyme activity. By using collagen as a substrate, the purified recombinant prolyl aminopeptidase contributed to the hydrolysis of collagen when used in combination with neutral protease, and free amino acids in collagen hydrolysates was significantly increased.


Assuntos
Aminopeptidases/genética , Aminopeptidases/metabolismo , Aspergillus oryzae/enzimologia , Colágeno/metabolismo , Engenharia Genética/métodos , Prolina/metabolismo , Proteólise , Sequência de Aminoácidos , Aminopeptidases/química , Aminopeptidases/isolamento & purificação , Aspergillus oryzae/genética , Clonagem Molecular , Escherichia coli/genética , Expressão Gênica , Hidrólise , Modelos Moleculares , Dados de Sequência Molecular , Estrutura Secundária de Proteína , Especificidade por Substrato
18.
J Basic Microbiol ; 54(10): 1110-9, 2014 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-24442752

RESUMO

Pseudomonas aeruginosa NJ-814, isolated from garden soil, produced an extracellular aminopeptidase that was purified using ammonium sulfate precipitation and ion exchange chromatography. The purity was confirmed by sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) and the Mr value of the enzyme was estimated to be 55 kDa. The purified enzyme shows maximum activity at pH 9.0 and 80 °C. It exhibits high thermo-stability. Half of the activity can remain after incubation at 80 °C for 119 min. It is stable within pH range of 7.5-10.5. It is strongly activated by Co(2+) and inhibited by Fe(2+) , Cu(2+) , Ni(2+) , Zn(2+) , and ethylene diamine tetraacetic acid (EDTA). The specificity of the enzyme was investigated. Within several aminoacyl-p-nitroanilines (AA-pNA), Lys-pNA is proven to be the optimal substrate. The Michaelis-Menten constant (Km ) of the enzyme for Lys-pNA and Leu-pNA were 2.32 and 9.41 mM, respectively. Peptide map fingerprinting shows that the sequence of the enzyme is highly similar to aminopeptidase Y from P. aeruginosa 18A. It can be speculated that this enzyme is a Zn(2+) -dependent enzyme and contains two zinc ions in its active site.


Assuntos
Aminopeptidases/isolamento & purificação , Aminopeptidases/metabolismo , Pseudomonas aeruginosa/enzimologia , Sequência de Aminoácidos , Aminopeptidases/antagonistas & inibidores , Aminopeptidases/química , Estabilidade Enzimática , Concentração de Íons de Hidrogênio , Cinética , Metais/farmacologia , Dados de Sequência Molecular , Microbiologia do Solo , Especificidade por Substrato , Temperatura
19.
Enzyme Microb Technol ; 55: 7-13, 2014 Feb 05.
Artigo em Inglês | MEDLINE | ID: mdl-24411439

RESUMO

Presence of proline residues in the second position of the N-terminus in peptides restricts the usage of many aminopeptidases; however, aminopeptidase P (APP) is capable of removing this blockage. Based on the N-terminal amino acid sequences of APP from Streptomyces lavendulae, app gene was cloned in pET28a(+) and over expressed as a His-tagged protein with a molecular weight of ≈60 kDa in Escherichia coli BL21 (DE3). Nucleotide sequencing revealed a 1467 bp open reading frame encoding 488 amino acids (NCBI Accession No: GenBank: KC292272.1). The substrate specificity of the recombinant APP was analyzed by the hydrolysis of the Xaa-Pro bond in Gly-Pro dipeptide and bradykinin. K(m) and V(max) of the enzyme were found to be 0.4697 mmol l⁻¹ and 0.6396 µmol min⁻¹, respectively. APP activity was enhanced in the presence of metal ions such as Co²âº, Mn²âº, Mg²âº and Cu²âº ions and was inhibited by 1,10-phenanthroline, EDTA, PMSF and DTT. The atomic absorption studies revealed the presence of Mn²âº in the protein as a co-factor. This substrate specific metalloenzyme was found to be a tetramer and optimally active at pH 8 and 37 °C.


Assuntos
Aminopeptidases/química , Proteínas de Bactérias/química , Streptomyces/enzimologia , Sequência de Aminoácidos , Aminopeptidases/antagonistas & inibidores , Aminopeptidases/genética , Aminopeptidases/isolamento & purificação , Aminopeptidases/metabolismo , Proteínas de Bactérias/antagonistas & inibidores , Proteínas de Bactérias/genética , Proteínas de Bactérias/isolamento & purificação , Proteínas de Bactérias/metabolismo , Cátions , Clonagem Molecular , Escherichia coli , Genes Bacterianos , Concentração de Íons de Hidrogênio , Hidrólise , Dados de Sequência Molecular , Peso Molecular , Proteínas Recombinantes , Alinhamento de Sequência , Homologia de Sequência de Aminoácidos , Especificidade por Substrato , Temperatura
20.
PLoS One ; 8(7): e70055, 2013.
Artigo em Inglês | MEDLINE | ID: mdl-23894590

RESUMO

The proline-specific X-prolyl dipeptidyl aminopeptidase (PepX; EC 3.4.14.11) and the general aminopeptidase N (PepN; EC 3.4.11.2) from Lactobacillus helveticus ATCC 12046 were produced recombinantly in E. coli BL21(DE3) via bioreactor cultivation. The maximum enzymatic activity obtained for PepX was 800 µkat(H-Ala-Pro-pNA) L(-1), which is approx. 195-fold higher than values published previously. To the best of our knowledge, PepN was expressed in E. coli at high levels for the first time. The PepN activity reached 1,000 µkat(H-Ala-pNA) L(-1). After an automated chromatographic purification, both peptidases were biochemically and kinetically characterized in detail. Substrate inhibition of PepN and product inhibition of both PepX and PepN were discovered for the first time. An apo-enzyme of the Zn(2+)-dependent PepN was generated, which could be reactivated by several metal ions in the order of Co(2+)>Zn(2+)>Mn(2+)>Ca(2+)>Mg(2+). PepX and PepN exhibited a clear synergistic effect in casein hydrolysis studies. Here, the relative degree of hydrolysis (rDH) was increased by approx. 132%. Due to the remarkable temperature stability at 50°C and the complementary substrate specificities of both peptidases, a future application in food protein hydrolysis might be possible.


Assuntos
Aminopeptidases/metabolismo , Proteínas de Bactérias/metabolismo , Caseínas/metabolismo , Dipeptidil Peptidases e Tripeptidil Peptidases/metabolismo , Lactobacillus helveticus/enzimologia , Proteínas Recombinantes/metabolismo , Aminopeptidases/química , Aminopeptidases/genética , Aminopeptidases/isolamento & purificação , Proteínas de Bactérias/química , Proteínas de Bactérias/genética , Proteínas de Bactérias/isolamento & purificação , Dipeptidil Peptidases e Tripeptidil Peptidases/química , Dipeptidil Peptidases e Tripeptidil Peptidases/genética , Dipeptidil Peptidases e Tripeptidil Peptidases/isolamento & purificação , Ativação Enzimática , Inibidores Enzimáticos/farmacologia , Escherichia coli/genética , Escherichia coli/metabolismo , Expressão Gênica , Concentração de Íons de Hidrogênio , Hidrólise , Lactobacillus helveticus/genética , Dados de Sequência Molecular , Peso Molecular , Estabilidade Proteica , Proteínas Recombinantes/química , Proteínas Recombinantes/genética , Proteínas Recombinantes/isolamento & purificação , Análise de Sequência de DNA , Termodinâmica
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